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LOC117656119 beta-galactosidase [ Pantherophis guttatus ]

Gene ID: 117656119, updated on 30-Nov-2023

Summary

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Gene symbol
LOC117656119
Gene description
beta-galactosidase
See related
EnsemblRapid:ENSPGUG00005005176
Gene type
protein coding
RefSeq status
MODEL
Organism
Pantherophis guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis
Also known as
GLB1
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Genomic context

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See LOC117656119 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_10 current CU_Pguttatus_1 (GCF_029531705.1) Unplaced Scaffold NW_026844099.1 (13407953..13604030, complement)
100 previous assembly UNIGE_PanGut_3.0 (GCF_001185365.1) Unplaced Scaffold NW_023010908.1 (4855357..5049861, complement)

NW_026844099.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117656110 Neighboring gene mitochondrial glycine transporter-like Neighboring gene transmembrane protein with metallophosphoesterase domain-like Neighboring gene cartilage-associated protein Neighboring gene upstream-binding protein 1 Neighboring gene CLIP-associating protein 2 Neighboring gene uncharacterized LOC117656159

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-galactosidase
Names
galactosidase beta 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029531705.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pguttatus_1

Genomic

  1. NW_026844099.1 Reference CU_Pguttatus_1

    Range
    13407953..13604030 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034404140.2 → XP_034260031.2  beta-galactosidase isoform X2

  2. XM_034404139.2 → XP_034260030.2  beta-galactosidase isoform X1

  3. XM_034404141.2 → XP_034260032.2  beta-galactosidase isoform X3

  4. XM_060683667.1 → XP_060539650.1  beta-galactosidase isoform X3

RNA

  1. XR_004588892.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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