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GPNMB glycoprotein nmb [ Pantherophis guttatus ]

Gene ID: 117654974, updated on 19-Mar-2024

Summary

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Gene symbol
GPNMB
Gene description
glycoprotein nmb
See related
EnsemblRapid:ENSPGUG00005004775
Gene type
protein coding
RefSeq status
MODEL
Organism
Pantherophis guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis
Orthologs
human mouse all
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Genomic context

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See GPNMB in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_10 current CU_Pguttatus_1 (GCF_029531705.1) Unplaced Scaffold NW_026844015.1 (34968744..35001746)
100 previous assembly UNIGE_PanGut_3.0 (GCF_001185365.1) Unplaced Scaffold NW_023010903.1 (8515492..8548399, complement)

NW_026844015.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132709398 Neighboring gene nucleoporin 42 Neighboring gene mitochondrial assembly of ribosomal large subunit 1 Neighboring gene insulin like growth factor 2 mRNA binding protein 3 Neighboring gene uncharacterized LOC117655069

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane glycoprotein NMB

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029531705.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pguttatus_1

Genomic

  1. NW_026844015.1 Reference CU_Pguttatus_1

    Range
    34968744..35001746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034401980.2 → XP_034257871.1  transmembrane glycoprotein NMB

    UniProtKB/TrEMBL
    A0A6P9AQB8
    Related
    ENSPGUP00005006521.1
    Conserved Domains (1) summary
    cd00146
    Location:259 → 319
    PKD; polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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