U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

bark protein bark beetle [ Thrips palmi ]

Gene ID: 117647463, updated on 24-May-2024

Summary

Go to the top of the page Help
Gene symbol
bark
Gene description
protein bark beetle
See related
EnsemblRapid:LOC117647463
Gene type
protein coding
RefSeq status
MODEL
Organism
Thrips palmi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Thysanoptera; Terebrantia; Thripoidea; Thripidae; Thrips
Orthologs
fruit fly all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See bark in Genome Data Viewer
Location:
chromosome: Un
Exon count:
39
Annotation release Status Assembly Chr Location
100 current TpBJ-2018v1 (GCF_012932325.1) Unplaced Scaffold NW_023144621.1 (15616115..15644923, complement)

NW_023144621.1Genomic Context describing neighboring genes Neighboring gene rhophilin-2 Neighboring gene pancreatic lipase-related protein 2-like Neighboring gene uncharacterized LOC117645586 Neighboring gene mitochondrial ribosomal protein L4 Neighboring gene protein tyrosine kinase 2 Fak

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_023144621 Unplaced Scaffold Reference TpBJ-2018v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Phylogenomics and the evolution of hemipteroid insects. Johnson KP, et al. Proc Natl Acad Sci U S A, 2018 Dec 11. PMID 30478043, Free PMC Article
  2. Phylogenomics resolves the timing and pattern of insect evolution. Misof B, et al. Science, 2014 Nov 7. PMID 25378627

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein bark beetle

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Thrips palmi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TpBJ-2018v1 Primary Assembly

Genomic

  1. NW_023144621.1 Reference TpBJ-2018v1 Primary Assembly

    Range
    15616115..15644923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034389229.1 → XP_034245120.1  protein bark beetle isoform X3

    UniProtKB/TrEMBL
    A0A6P8Z4T6
    Related
    XP_034245120.1, XM_034389229.1
    Conserved Domains (5) summary
    smart00034
    Location:2458 → 2553
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    smart00202
    Location:74 → 178
    SR; Scavenger receptor Cys-rich
    pfam00530
    Location:938 → 1038
    SRCR; Scavenger receptor cysteine-rich domain
    pfam13229
    Location:446 → 548
    Beta_helix; Right handed beta helix region
    cl00049
    Location:355 → 438
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.

  2. XM_034389212.1 → XP_034245103.1  protein bark beetle isoform X1

    UniProtKB/TrEMBL
    A0A6P8YY77
    Related
    XP_034245103.1, XM_034389212.1
    Conserved Domains (5) summary
    smart00034
    Location:2463 → 2558
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    smart00202
    Location:74 → 178
    SR; Scavenger receptor Cys-rich
    pfam00530
    Location:938 → 1038
    SRCR; Scavenger receptor cysteine-rich domain
    pfam13229
    Location:446 → 548
    Beta_helix; Right handed beta helix region
    cl00049
    Location:355 → 438
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.

  3. XM_034389220.1 → XP_034245111.1  protein bark beetle isoform X2

    UniProtKB/TrEMBL
    A0A6P8Z5J7
    Related
    XP_034245111.1, XM_034389220.1
    Conserved Domains (4) summary
    smart00034
    Location:2311 → 2406
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    pfam00530
    Location:786 → 886
    SRCR; Scavenger receptor cysteine-rich domain
    pfam13229
    Location:294 → 396
    Beta_helix; Right handed beta helix region
    cl00049
    Location:203 → 286
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases