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SWIP strumpellin and WASH-interacting protein [ Thrips palmi ]

Gene ID: 117645676, updated on 23-May-2024

Summary

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Gene symbol
SWIP
Gene description
strumpellin and WASH-interacting protein
See related
EnsemblRapid:LOC117645676
Gene type
protein coding
RefSeq status
MODEL
Organism
Thrips palmi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Thysanoptera; Terebrantia; Thripoidea; Thripidae; Thrips
Orthologs
fruit fly all
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Genomic context

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See SWIP in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current TpBJ-2018v1 (GCF_012932325.1) Unplaced Scaffold NW_023144628.1 (10352491..10358226, complement)

NW_023144628.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117646194 Neighboring gene myristoylated alanine-rich C-kinase substrate Neighboring gene uncharacterized LOC117645681 Neighboring gene tetratricopeptide repeat protein 8 Neighboring gene translocase of outer membrane 70

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023144628 Unplaced Scaffold Reference TpBJ-2018v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenomics and the evolution of hemipteroid insects. Johnson KP, et al. Proc Natl Acad Sci U S A, 2018 Dec 11. PMID 30478043, Free PMC Article
  2. Phylogenomics resolves the timing and pattern of insect evolution. Misof B, et al. Science, 2014 Nov 7. PMID 25378627
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of WASH complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WASH complex subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Thrips palmi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TpBJ-2018v1 Primary Assembly

Genomic

  1. NW_023144628.1 Reference TpBJ-2018v1 Primary Assembly

    Range
    10352491..10358226 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034385992.1 → XP_034241883.1  WASH complex subunit 4 isoform X2

    UniProtKB/TrEMBL
    A0A6P8YPL8
    Related
    XP_034241883.1, XM_034385992.1
    Conserved Domains (3) summary
    pfam14744
    Location:594 → 936
    WASH-7_mid; WASH complex subunit 7
    pfam14745
    Location:29 → 589
    WASH-7_N; WASH complex subunit 7, N-terminal
    pfam14746
    Location:953 → 1122
    WASH-7_C; WASH complex subunit 7, C-terminal

  2. XM_034385991.1 → XP_034241882.1  WASH complex subunit 4 isoform X1

    UniProtKB/TrEMBL
    A0A6P8Z5H8
    Related
    XP_034241882.1, XM_034385991.1
    Conserved Domains (3) summary
    pfam14744
    Location:595 → 937
    WASH-7_mid; WASH complex subunit 7
    pfam14745
    Location:29 → 590
    WASH-7_N; WASH complex subunit 7, N-terminal
    pfam14746
    Location:954 → 1123
    WASH-7_C; WASH complex subunit 7, C-terminal
Nucleotide Protein
Heading Accession and Version

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