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LOC117641218 laminin subunit alpha-1 [ Thrips palmi ]

Gene ID: 117641218, updated on 10-May-2024

Summary

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Gene symbol
LOC117641218
Gene description
laminin subunit alpha-1
See related
EnsemblRapid:LOC117641218
Gene type
protein coding
RefSeq status
MODEL
Organism
Thrips palmi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Thysanoptera; Terebrantia; Thripoidea; Thripidae; Thrips
Orthologs
fruit fly all
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Genomic context

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See LOC117641218 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
40
Annotation release Status Assembly Chr Location
100 current TpBJ-2018v1 (GCF_012932325.1) Unplaced Scaffold NW_023144624.1 (10896650..10965692, complement)

NW_023144624.1Genomic Context describing neighboring genes Neighboring gene spermine oxidase Neighboring gene transfer RNA leucine (anticodon CAA) Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene lost and found Neighboring gene uncharacterized protein C11D3.03c Neighboring gene uncharacterized protein ZK1073.1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023144624 Unplaced Scaffold Reference TpBJ-2018v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Thrips palmi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TpBJ-2018v1 Primary Assembly

Genomic

  1. NW_023144624.1 Reference TpBJ-2018v1 Primary Assembly

    Range
    10896650..10965692 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034378369.1 → XP_034234260.1  laminin subunit alpha-1

    UniProtKB/TrEMBL
    A0A6P8YBS7
    Related
    XP_034234260.1, XM_034378369.1
    Conserved Domains (9) summary
    smart00180
    Location:1116 → 1161
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    COG5281
    Location:1973 → 2326
    COG5281; Phage-related minor tail protein [Mobilome: prophages, transposons]
    cd00055
    Location:1598 → 1645
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3179 → 3334
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00052
    Location:1417 → 1555
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1211 → 1259
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:47 → 289
    Laminin_N; Laminin N-terminal (Domain VI)
    NF033759
    Location:805 → 1039
    exchanger_TraA; outer membrane exchange protein TraA
    cl22861
    Location:2372 → 2514
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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