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LOC117640406 elongation of very long chain fatty acids protein 4-like [ Thrips palmi ]

Gene ID: 117640406, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117640406
Gene description
elongation of very long chain fatty acids protein 4-like
See related
EnsemblRapid:LOC117640406
Gene type
protein coding
RefSeq status
MODEL
Organism
Thrips palmi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Thysanoptera; Terebrantia; Thripoidea; Thripidae; Thrips
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Genomic context

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See LOC117640406 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current TpBJ-2018v1 (GCF_012932325.1) Unplaced Scaffold NW_023144623.1 (2805738..2811164)

NW_023144623.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117640263 Neighboring gene uncharacterized LOC117640264 Neighboring gene gustatory receptor for sugar taste 43a-like Neighboring gene SET domain-containing protein SmydA-8-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023144623 Unplaced Scaffold Reference TpBJ-2018v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenomics and the evolution of hemipteroid insects. Johnson KP, et al. Proc Natl Acad Sci U S A, 2018 Dec 11. PMID 30478043, Free PMC Article
  2. Phylogenomics resolves the timing and pattern of insect evolution. Misof B, et al. Science, 2014 Nov 7. PMID 25378627
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fatty acid elongase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid elongation, monounsaturated fatty acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid elongation, polyunsaturated fatty acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid elongation, saturated fatty acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
elongation of very long chain fatty acids protein 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Thrips palmi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TpBJ-2018v1 Primary Assembly

Genomic

  1. NW_023144623.1 Reference TpBJ-2018v1 Primary Assembly

    Range
    2805738..2811164
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034376906.1 → XP_034232797.1  elongation of very long chain fatty acids protein 4-like

    UniProtKB/TrEMBL
    A0A6P8YFU8
    Related
    XP_034232797.1, XM_034376906.1
    Conserved Domains (1) summary
    pfam01151
    Location:17 → 253
    ELO; GNS1/SUR4 family
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases