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LOC117638884 prunin 1 Pru du 6.0101 [ Prunus dulcis (almond) ]

Gene ID: 117638884, updated on 10-Oct-2024

Summary

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Gene symbol
LOC117638884
Gene description
prunin 1 Pru du 6.0101
Locus tag
ALMOND_2B017935
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Also known as
pru1; prunin
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Genomic context

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Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 8 NC_047657.1 (18021054..18023308, complement)

Chromosome 8 - NC_047657.1Genomic Context describing neighboring genes Neighboring gene structural maintenance of chromosomes protein 1 Neighboring gene patellin-4-like Neighboring gene uncharacterized LOC117638886 Neighboring gene uncharacterized LOC117638885 Neighboring gene mitochondrial import inner membrane translocase subunit TIM44-2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047657.1 Chromosome 8 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning, expression and patient IgE reactivity of recombinant Pru du 6, an 11S globulin from almond. Willison LN, et al. Int Arch Allergy Immunol, 2011. PMID 21720172
  2. Molecular characterization of cDNAs corresponding to genes expressed during almond (Prunus amygdalus Batsch) seed development. Garcia-Mas J, et al. Plant Mol Biol, 1995 Jan. PMID 7865791
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nutrient reservoir activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prunin 1 Pru du 6; prunin 1 Pru du 6.0101
Names
11S globulin
11S seed storage protein
Allergen Pru du 6.01
Amandin Pru du 6
Amandin Pru du 6.0101
PREDICTED: legumin
Pru 1 Pru du 6
Pru du amandin
Pru1 Pru du 6.0101
Prunin 1 Pru du 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001404974.1 → NP_001391903.1  prunin 1 Pru du 6 precursor

    Status: VALIDATED

    Source sequence(s)
    BU572601, BU572848, BU573708, BU573709, BU573717, BU573718, BU573759, BU573854
    UniProtKB/TrEMBL
    A0A5E4FFS0

RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047657.1 Reference ALMONDv2 Primary Assembly

    Range
    18021054..18023308 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034374044.1 → XP_034229935.1  prunin 1 Pru du 6.0101

    Conserved Domains (1) summary
    cl40423
    Location:5 → 540
    cupin_RmlC-like; RmlC-like cupin superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
E3SH28.1 GenPept UniProtKB/Swiss-Prot:E3SH28
Q43607.1 GenPept UniProtKB/Swiss-Prot:Q43607

Gene LinkOut

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Molecular Biology Databases