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LOC117636530 extracellular ribonuclease LE-like [ Prunus dulcis (almond) ]

Gene ID: 117636530, updated on 9-Nov-2023

Summary

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Gene symbol
LOC117636530
Gene description
extracellular ribonuclease LE-like
Locus tag
ALMOND_2B024913
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Also known as
Pd2
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Genomic context

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See LOC117636530 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 1 NC_047650.1 (24692810..24694357)

Chromosome 1 - NC_047650.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g02980, chloroplastic Neighboring gene amino acid transporter AVT1J-like Neighboring gene ribonuclease 3-like Neighboring gene beta-1,3-galactosyltransferase GALT1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047650.1 Chromosome 1 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The RNase PD2 gene of almond (Prunus dulcis) represents an evolutionarily distinct class of S-like RNase genes. Ma RC, et al. Mol Gen Genet, 2000 Jul. PMID 10954077
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribonuclease T2 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
extracellular ribonuclease LE-like
Names
PREDICTED: ribonuclease
RNase PD2
S-like ribonuclease

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047650.1 Reference ALMONDv2 Primary Assembly

    Range
    24692810..24694357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034371073.1 → XP_034226964.1  extracellular ribonuclease LE-like

    UniProtKB/TrEMBL
    Q9LLS1
    Conserved Domains (1) summary
    pfam00445
    Location:26 → 209
    Ribonuclease_T2; Ribonuclease T2 family
Nucleotide Protein
Heading Accession and Version

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