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LOC117636307 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 [ Prunus dulcis (almond) ]

Gene ID: 117636307, updated on 9-Nov-2023

Summary

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Gene symbol
LOC117636307
Gene description
putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3
Locus tag
ALMOND_2B031613
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 8 NC_047657.1 (1508437..1512329, complement)

Chromosome 8 - NC_047657.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g15630, mitochondrial Neighboring gene uncharacterized LOC117636913 Neighboring gene uncharacterized LOC117637773 Neighboring gene putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 Neighboring gene vacuolar protein sorting-associated protein 45 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047657.1 Chromosome 8 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3
Names
PREDICTED: UDP-glucuronate xylan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047657.1 Reference ALMONDv2 Primary Assembly

    Range
    1508437..1512329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034370744.1 → XP_034226635.1  putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3

    UniProtKB/TrEMBL
    A0A5E4G1I4
    Conserved Domains (1) summary
    cd02537
    Location:312 → 557
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein
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