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LOC117636070 sucrose synthase [ Prunus dulcis (almond) ]

Gene ID: 117636070, updated on 9-Nov-2023

Summary

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Gene symbol
LOC117636070
Gene description
sucrose synthase
Locus tag
ALMOND_2B005915
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117636070 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 7 NC_047656.1 (17212876..17218920)

Chromosome 7 - NC_047656.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit K Neighboring gene kinesin-like protein NACK2 Neighboring gene pectinesterase-like Neighboring gene uncharacterized LOC117634060

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047656.1 Chromosome 7 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase
Names
PREDICTED: sucrose

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047656.1 Reference ALMONDv2 Primary Assembly

    Range
    17212876..17218920
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034370509.1 → XP_034226400.1  sucrose synthase

    UniProtKB/TrEMBL
    A0A4Y1RW38, A0A5E4E4A6
    Conserved Domains (1) summary
    PLN00142
    Location:1 → 806
    PLN00142; sucrose synthase

  2. XM_034370510.1 → XP_034226401.1  sucrose synthase

    UniProtKB/TrEMBL
    A0A4Y1RW38, A0A5E4E4A6
    Conserved Domains (1) summary
    PLN00142
    Location:1 → 806
    PLN00142; sucrose synthase
Nucleotide Protein
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