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LOC117632394 callose synthase 9 [ Prunus dulcis (almond) ]

Gene ID: 117632394, updated on 9-Nov-2023

Summary

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Gene symbol
LOC117632394
Gene description
callose synthase 9
Locus tag
ALMOND_2B022349
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117632394 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
53
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 6 NC_047655.1 (806801..837480, complement)

Chromosome 6 - NC_047655.1Genomic Context describing neighboring genes Neighboring gene FT-interacting protein 4-like Neighboring gene uncharacterized LOC117631255 Neighboring gene callose synthase 3 Neighboring gene callose synthase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047655.1 Chromosome 6 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 9
Names
PREDICTED: callose synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047655.1 Reference ALMONDv2 Primary Assembly

    Range
    806801..837480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034365852.1 → XP_034221743.1  callose synthase 9 isoform X1

    UniProtKB/TrEMBL
    A0A4Y1RL10, A0A5E4F6J3
    Conserved Domains (2) summary
    pfam02364
    Location:1025 → 1765
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:337 → 446
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  2. XM_034365853.1 → XP_034221744.1  callose synthase 9 isoform X2

    UniProtKB/TrEMBL
    A0A4Y1RL10
    Conserved Domains (2) summary
    pfam02364
    Location:930 → 1670
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:242 → 351
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

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