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LOC117631907 UDP-N-acetylglucosamine transferase subunit ALG13 homolog [ Prunus dulcis (almond) ]

Gene ID: 117631907, updated on 6-Jun-2024

Summary

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Gene symbol
LOC117631907
Gene description
UDP-N-acetylglucosamine transferase subunit ALG13 homolog
Locus tag
ALMOND_2B013340
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117631907 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 6 NC_047655.1 (27669555..27671417)

Chromosome 6 - NC_047655.1Genomic Context describing neighboring genes Neighboring gene basic 7S globulin-like Neighboring gene heavy metal-associated isoprenylated plant protein 34-like Neighboring gene probable serine/threonine-protein kinase PBL7 Neighboring gene DNA excision repair protein ERCC-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047655.1 Chromosome 6 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dolichol-linked oligosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of UDP-N-acetylglucosamine transferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine transferase subunit ALG13 homolog
Names
PREDICTED: UDP-N-acetylglucosamine transferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047655.1 Reference ALMONDv2 Primary Assembly

    Range
    27669555..27671417
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034365249.1 → XP_034221140.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog

    UniProtKB/TrEMBL
    A0A5E4EA73, A0AAD4YYY0
    Conserved Domains (1) summary
    pfam04101
    Location:13 → 172
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  2. XM_034365247.1 → XP_034221138.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog

    UniProtKB/TrEMBL
    A0A5E4EA73, A0AAD4YYY0
    Conserved Domains (1) summary
    pfam04101
    Location:13 → 172
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain
Nucleotide Protein
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