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LOC117631547 beta-1,4-xylosyltransferase IRX9 [ Prunus dulcis (almond) ]

Gene ID: 117631547, updated on 9-Nov-2023

Summary

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Gene symbol
LOC117631547
Gene description
beta-1,4-xylosyltransferase IRX9
Locus tag
ALMOND_2B003415
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117631547 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 6 NC_047655.1 (22693183..22695890, complement)

Chromosome 6 - NC_047655.1Genomic Context describing neighboring genes Neighboring gene DNA-binding protein S1FA-like Neighboring gene protein IQ-DOMAIN 1-like Neighboring gene pentatricopeptide repeat-containing protein At3g53360, mitochondrial Neighboring gene DEAD-box ATP-dependent RNA helicase 57 Neighboring gene importin subunit alpha-9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047655.1 Chromosome 6 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-xylosyltransferase IRX9
Names
PREDICTED: probable

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047655.1 Reference ALMONDv2 Primary Assembly

    Range
    22693183..22695890 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034364775.1 → XP_034220666.1  beta-1,4-xylosyltransferase IRX9

    UniProtKB/TrEMBL
    A0A4Y1RNT8, A0A5E4EQJ9
    Conserved Domains (1) summary
    cl11394
    Location:1 → 346
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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