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LOC117630924 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [ Prunus dulcis (almond) ]

Gene ID: 117630924, updated on 6-Jun-2024

Summary

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Gene symbol
LOC117630924
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
Locus tag
ALMOND_2B017236
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117630924 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 1 NC_047650.1 (7792610..7795958, complement)

Chromosome 1 - NC_047650.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117622884 Neighboring gene cyclic nucleotide-gated ion channel 17-like Neighboring gene uncharacterized LOC117616594 Neighboring gene uncharacterized LOC117616094

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047650.1 Chromosome 1 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
Names
PREDICTED: alpha alpha-trehalose-phosphate

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047650.1 Reference ALMONDv2 Primary Assembly

    Range
    7792610..7795958 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034363795.1 → XP_034219686.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    UniProtKB/TrEMBL
    A0A5E4EU89, A0AAD4ZKN8
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 842
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Nucleotide Protein
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