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LOC117629188 galactoside 2-alpha-L-fucosyltransferase-like [ Prunus dulcis (almond) ]

Gene ID: 117629188, updated on 6-Jun-2024

Summary

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Gene symbol
LOC117629188
Gene description
galactoside 2-alpha-L-fucosyltransferase-like
Locus tag
ALMOND_2B032121
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117629188 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 5 NC_047654.1 (15655312..15658398, complement)

Chromosome 5 - NC_047654.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117629125 Neighboring gene uncharacterized LOC117629126 Neighboring gene ribulose-phosphate 3-epimerase, chloroplastic Neighboring gene NEP1-interacting protein-like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047654.1 Chromosome 5 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactoside 2-alpha-L-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactoside 2-alpha-L-fucosyltransferase-like
Names
PREDICTED: galactoside

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047654.1 Reference ALMONDv2 Primary Assembly

    Range
    15655312..15658398 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034361692.1 → XP_034217583.1  galactoside 2-alpha-L-fucosyltransferase-like

    UniProtKB/TrEMBL
    A0A5E4FR38, A0AAD4Z290
    Conserved Domains (1) summary
    cl16914
    Location:96 → 538
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins
Nucleotide Protein
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