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LOC117628855 beta-1,6-galactosyltransferase GALT31A [ Prunus dulcis (almond) ]

Gene ID: 117628855, updated on 6-Jun-2024

Summary

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Gene symbol
LOC117628855
Gene description
beta-1,6-galactosyltransferase GALT31A
Locus tag
ALMOND_2B003684
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117628855 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 5 NC_047654.1 (12048345..12052333, complement)

Chromosome 5 - NC_047654.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117626963 Neighboring gene uncharacterized LOC117627174 Neighboring gene subtilisin-like protease SBT3.4 Neighboring gene subtilisin-like protease SBT3.5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047654.1 Chromosome 5 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,6-galactosyltransferase GALT31A
Names
PREDICTED: beta-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047654.1 Reference ALMONDv2 Primary Assembly

    Range
    12048345..12052333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034361394.1 → XP_034217285.1  beta-1,6-galactosyltransferase GALT31A

    UniProtKB/TrEMBL
    A0A5E4EZY2, A0AAD4VQI9
    Conserved Domains (1) summary
    PLN03193
    Location:11 → 403
    PLN03193; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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