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LOC117628504 dolichol-phosphate mannosyltransferase subunit 1 [ Prunus dulcis (almond) ]

Gene ID: 117628504, updated on 6-Jun-2024

Summary

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Gene symbol
LOC117628504
Gene description
dolichol-phosphate mannosyltransferase subunit 1
Locus tag
ALMOND_2B000783
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117628504 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 5 NC_047654.1 (12170124..12173796, complement)

Chromosome 5 - NC_047654.1Genomic Context describing neighboring genes Neighboring gene protein NTM1-like 9 Neighboring gene E3 ubiquitin-protein ligase MARCHF2 Neighboring gene uncharacterized LOC117628260 Neighboring gene WAT1-related protein At3g30340-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047654.1 Chromosome 5 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-phosphate beta-D-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dolichol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dolichol-phosphate mannosyltransferase subunit 1
Names
PREDICTED: dolichol-phosphate mannosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047654.1 Reference ALMONDv2 Primary Assembly

    Range
    12170124..12173796 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034360979.1 → XP_034216870.1  dolichol-phosphate mannosyltransferase subunit 1

    UniProtKB/TrEMBL
    A0A5E4EVQ6, A0A5E4EXL4, A0AAD4Z1K4
    Conserved Domains (1) summary
    PLN02726
    Location:2 → 237
    PLN02726; dolichyl-phosphate beta-D-mannosyltransferase
Nucleotide Protein
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