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LOC117628492 granule-bound starch synthase 1, chloroplastic/amyloplastic-like [ Prunus dulcis (almond) ]

Gene ID: 117628492, updated on 18-Sep-2024

Summary

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Gene symbol
LOC117628492
Gene description
granule-bound starch synthase 1, chloroplastic/amyloplastic-like
Locus tag
ALMOND_2B005556
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117628492 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 5 NC_047654.1 (12024093..12028393, complement)

Chromosome 5 - NC_047654.1Genomic Context describing neighboring genes Neighboring gene glucan endo-1,3-beta-glucosidase 11 Neighboring gene uncharacterized LOC117628058 Neighboring gene uncharacterized LOC117626963 Neighboring gene uncharacterized LOC117627174

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047654.1 Chromosome 5 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
granule-bound starch synthase 1, chloroplastic/amyloplastic-like
Names
PREDICTED: granule-bound starch

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047654.1 Reference ALMONDv2 Primary Assembly

    Range
    12024093..12028393 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034360965.1 → XP_034216856.1  granule-bound starch synthase 1, chloroplastic/amyloplastic-like

    UniProtKB/TrEMBL
    A0A5E4EUQ4, A0AAD4VSB2
    Conserved Domains (1) summary
    cd03791
    Location:88 → 587
    GT5_Glycogen_synthase_DULL1-like; Glycogen synthase GlgA and similar proteins

  2. XM_034360966.1 → XP_034216857.1  granule-bound starch synthase 1, chloroplastic/amyloplastic-like

    UniProtKB/TrEMBL
    A0A5E4EUQ4, A0AAD4VSB2
    Conserved Domains (1) summary
    cd03791
    Location:88 → 587
    GT5_Glycogen_synthase_DULL1-like; Glycogen synthase GlgA and similar proteins
Nucleotide Protein
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