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LOC117627893 alpha-1,3/1,6-mannosyltransferase ALG2-like [ Prunus dulcis (almond) ]

Gene ID: 117627893, updated on 18-Sep-2024

Summary

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Gene symbol
LOC117627893
Gene description
alpha-1,3/1,6-mannosyltransferase ALG2-like
Locus tag
ALMOND_2B017443
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117627893 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 5 NC_047654.1 (5392075..5397090, complement)

Chromosome 5 - NC_047654.1Genomic Context describing neighboring genes Neighboring gene SNF2 domain-containing protein CLASSY 4-like Neighboring gene vacuolar protein sorting-associated protein 22 homolog 1-like Neighboring gene vacuolar protein sorting-associated protein 22 homolog 1-like Neighboring gene uncharacterized LOC117627546 Neighboring gene 60S ribosomal protein L37a Neighboring gene transfer RNA glutamic acid (anticodon CUC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047654.1 Chromosome 5 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alpha-1,3-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,3/1,6-mannosyltransferase ALG2-like
Names
PREDICTED: alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047654.1 Reference ALMONDv2 Primary Assembly

    Range
    5392075..5397090 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034360183.1 → XP_034216074.1  alpha-1,3/1,6-mannosyltransferase ALG2-like isoform X3

    UniProtKB/TrEMBL
    A0A5E4FE35, A0AAD4VZW8
    Conserved Domains (1) summary
    cd03805
    Location:9 → 396
    GT4_ALG2-like; alpha-1,3/1,6-mannosyltransferase ALG2 and similar proteins

  2. XM_034360186.1 → XP_034216077.1  alpha-1,3/1,6-mannosyltransferase ALG2-like isoform X3

    UniProtKB/TrEMBL
    A0A5E4FE35, A0AAD4VZW8
    Conserved Domains (1) summary
    cd03805
    Location:9 → 396
    GT4_ALG2-like; alpha-1,3/1,6-mannosyltransferase ALG2 and similar proteins

  3. XM_034360188.1 → XP_034216079.1  alpha-1,3/1,6-mannosyltransferase ALG2-like isoform X3

    UniProtKB/TrEMBL
    A0A5E4FE35, A0AAD4VZW8
    Conserved Domains (1) summary
    cd03805
    Location:9 → 396
    GT4_ALG2-like; alpha-1,3/1,6-mannosyltransferase ALG2 and similar proteins

  4. XM_034360180.1 → XP_034216071.1  alpha-1,3/1,6-mannosyltransferase ALG2-like isoform X2

    UniProtKB/TrEMBL
    A0A5E4FDJ9
    Conserved Domains (1) summary
    cd03805
    Location:51 → 438
    GT4_ALG2-like; alpha-1,3/1,6-mannosyltransferase ALG2 and similar proteins

  5. XM_034360184.1 → XP_034216075.1  alpha-1,3/1,6-mannosyltransferase ALG2-like isoform X3

    UniProtKB/TrEMBL
    A0A5E4FE35, A0AAD4VZW8
    Conserved Domains (1) summary
    cd03805
    Location:9 → 396
    GT4_ALG2-like; alpha-1,3/1,6-mannosyltransferase ALG2 and similar proteins

  6. XM_034360187.1 → XP_034216078.1  alpha-1,3/1,6-mannosyltransferase ALG2-like isoform X3

    UniProtKB/TrEMBL
    A0A5E4FE35, A0AAD4VZW8
    Conserved Domains (1) summary
    cd03805
    Location:9 → 396
    GT4_ALG2-like; alpha-1,3/1,6-mannosyltransferase ALG2 and similar proteins

  7. XM_034360181.1 → XP_034216072.1  alpha-1,3/1,6-mannosyltransferase ALG2-like isoform X2

    UniProtKB/TrEMBL
    A0A5E4FDJ9
    Conserved Domains (1) summary
    cd03805
    Location:51 → 438
    GT4_ALG2-like; alpha-1,3/1,6-mannosyltransferase ALG2 and similar proteins

  8. XM_034360179.1 → XP_034216070.1  alpha-1,3/1,6-mannosyltransferase ALG2-like isoform X1

    UniProtKB/TrEMBL
    A0A5E4FDJ9
    Conserved Domains (1) summary
    cd03805
    Location:62 → 449
    GT4_ALG2-like; alpha-1,3/1,6-mannosyltransferase ALG2 and similar proteins

  9. XM_034360182.1 → XP_034216073.1  alpha-1,3/1,6-mannosyltransferase ALG2-like isoform X2

    UniProtKB/TrEMBL
    A0A5E4FDJ9
    Conserved Domains (1) summary
    cd03805
    Location:51 → 438
    GT4_ALG2-like; alpha-1,3/1,6-mannosyltransferase ALG2 and similar proteins

  10. XM_034360189.1 → XP_034216080.1  alpha-1,3/1,6-mannosyltransferase ALG2-like isoform X3

    UniProtKB/TrEMBL
    A0A5E4FE35, A0AAD4VZW8
    Conserved Domains (1) summary
    cd03805
    Location:9 → 396
    GT4_ALG2-like; alpha-1,3/1,6-mannosyltransferase ALG2 and similar proteins
Nucleotide Protein
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