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LOC117627447 probable xyloglucan 6-xylosyltransferase 5 [ Prunus dulcis (almond) ]

Gene ID: 117627447, updated on 9-Nov-2023

Summary

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Gene symbol
LOC117627447
Gene description
probable xyloglucan 6-xylosyltransferase 5
Locus tag
ALMOND_2B015778
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117627447 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 5 NC_047654.1 (15717070..15719007)

Chromosome 5 - NC_047654.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g61370, mitochondrial Neighboring gene protein yippee-like At4g27740 Neighboring gene uncharacterized LOC117627455 Neighboring gene protein yippee-like At4g27740 Neighboring gene uncharacterized LOC117627449

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047654.1 Chromosome 5 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan 6-xylosyltransferase 5
Names
PREDICTED: xyloglucan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047654.1 Reference ALMONDv2 Primary Assembly

    Range
    15717070..15719007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034359561.1 → XP_034215452.1  probable xyloglucan 6-xylosyltransferase 5

    UniProtKB/TrEMBL
    A0A5E4FR44
    Conserved Domains (1) summary
    PLN03182
    Location:34 → 451
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional
Nucleotide Protein
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