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LOC117626373 hydroxyproline O-galactosyltransferase GALT2 [ Prunus dulcis (almond) ]

Gene ID: 117626373, updated on 6-Jun-2024

Summary

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Gene symbol
LOC117626373
Gene description
hydroxyproline O-galactosyltransferase GALT2
Locus tag
ALMOND_2B001753
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117626373 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 4 NC_047653.1 (4493509..4499201)

Chromosome 4 - NC_047653.1Genomic Context describing neighboring genes Neighboring gene auxin response factor 6 Neighboring gene protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic Neighboring gene (S)-scoulerine 9-O-methyltransferase-like Neighboring gene CSC1-like protein ERD4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047653.1 Chromosome 4 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT2
Names
PREDICTED: hydroxyproline O-galactosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047653.1 Reference ALMONDv2 Primary Assembly

    Range
    4493509..4499201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034358037.1 → XP_034213928.1  hydroxyproline O-galactosyltransferase GALT2

    UniProtKB/TrEMBL
    A0A5E4FYW1, A0AAD4VY70
    Conserved Domains (1) summary
    PLN03133
    Location:150 → 681
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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