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LOC117623773 callose synthase 5 [ Prunus dulcis (almond) ]

Gene ID: 117623773, updated on 9-Nov-2023

Summary

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Gene symbol
LOC117623773
Gene description
callose synthase 5
Locus tag
ALMOND_2B006062
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117623773 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
42
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 4 NC_047653.1 (21125996..21142907)

Chromosome 4 - NC_047653.1Genomic Context describing neighboring genes Neighboring gene hydroxymethylglutaryl-CoA lyase, mitochondrial Neighboring gene mitogen-activated protein kinase kinase kinase 3 Neighboring gene small nucleolar RNA J33 Neighboring gene uncharacterized LOC117626538 Neighboring gene probable gamma-secretase subunit PEN-2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047653.1 Chromosome 4 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: callose synthase 5
Names
PREDICTED: callose synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047653.1 Reference ALMONDv2 Primary Assembly

    Range
    21125996..21142907
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034354746.1 → XP_034210637.1  LOW QUALITY PROTEIN: callose synthase 5

    UniProtKB/TrEMBL
    A0A5E4GD83
    Conserved Domains (3) summary
    pfam02364
    Location:1037 → 1781
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:47 → 154
    Vta1; Vta1 like
    pfam14288
    Location:321 → 434
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
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