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LOC117622939 probable galacturonosyltransferase 10 [ Prunus dulcis (almond) ]

Gene ID: 117622939, updated on 9-Nov-2023

Summary

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Gene symbol
LOC117622939
Gene description
probable galacturonosyltransferase 10
Locus tag
ALMOND_2B003249
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117622939 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 3 NC_047652.1 (19932595..19936036)

Chromosome 3 - NC_047652.1Genomic Context describing neighboring genes Neighboring gene probable cyclic nucleotide-gated ion channel 20, chloroplastic Neighboring gene protein TIC 20-IV, chloroplastic-like Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene QWRF motif-containing protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047652.1 Chromosome 3 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 10
Names
PREDICTED: probable galacturonosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047652.1 Reference ALMONDv2 Primary Assembly

    Range
    19932595..19936036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034353759.1 → XP_034209650.1  probable galacturonosyltransferase 10

    UniProtKB/TrEMBL
    A0A4Y1R7C2, A0A5E4FIQ3
    Conserved Domains (1) summary
    PLN02742
    Location:1 → 532
    PLN02742; Probable galacturonosyltransferase
Nucleotide Protein
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