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LOC117621550 probable UDP-arabinopyranose mutase 1 [ Prunus dulcis (almond) ]

Gene ID: 117621550, updated on 9-Nov-2023

Summary

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Gene symbol
LOC117621550
Gene description
probable UDP-arabinopyranose mutase 1
Locus tag
ALMOND_2B013686
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117621550 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 3 NC_047652.1 (20990590..20992993, complement)

Chromosome 3 - NC_047652.1Genomic Context describing neighboring genes Neighboring gene scarecrow-like protein 3 Neighboring gene probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 Neighboring gene cytochrome P450 85A Neighboring gene PI-PLC X domain-containing protein At5g67130

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047652.1 Chromosome 3 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-arabinopyranose mutase 1
Names
PREDICTED: UDP-arabinopyranose mutase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047652.1 Reference ALMONDv2 Primary Assembly

    Range
    20990590..20992993 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034352101.1 → XP_034207992.1  probable UDP-arabinopyranose mutase 1

    UniProtKB/TrEMBL
    A0A4Y1R7Y3, A0A5E4EVI1
    Conserved Domains (1) summary
    PLN03180
    Location:1 → 344
    PLN03180; reversibly glycosylated polypeptide; Provisional
Nucleotide Protein
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