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LOC117619824 dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase [ Prunus dulcis (almond) ]

Gene ID: 117619824, updated on 6-Jun-2024

Summary

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Gene symbol
LOC117619824
Gene description
dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase
Locus tag
ALMOND_2B012557
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117619824 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
21
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 2 NC_047651.1 (13908693..13915871, complement)

Chromosome 2 - NC_047651.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g02150 Neighboring gene PRA1 family protein F2-like Neighboring gene pentatricopeptide repeat-containing protein At1g71460, chloroplastic Neighboring gene probable helicase CHR10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047651.1 Chromosome 2 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase
Names
PREDICTED: dol-P-Man Man(7)GlcNAc(2)-PP-Dol

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047651.1 Reference ALMONDv2 Primary Assembly

    Range
    13908693..13915871 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034349865.1 → XP_034205756.1  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2

    UniProtKB/TrEMBL
    A0AAD4WJU9
    Conserved Domains (1) summary
    cl21590
    Location:33 → 399
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

  2. XM_034349864.1 → XP_034205755.1  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A5E4FYK6, A0AAD4WJU9
    Conserved Domains (1) summary
    cl21590
    Location:33 → 371
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

  3. XM_034349863.1 → XP_034205754.1  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A5E4FYK6, A0AAD4WJU9
    Conserved Domains (1) summary
    cl21590
    Location:33 → 371
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

  4. XM_034349867.1 → XP_034205758.1  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X3

    UniProtKB/TrEMBL
    A0AAD4WJU9
    Conserved Domains (1) summary
    cl21590
    Location:18 → 289
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

  5. XM_034349866.1 → XP_034205757.1  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X3

    UniProtKB/TrEMBL
    A0AAD4WJU9
    Conserved Domains (1) summary
    cl21590
    Location:18 → 289
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

RNA

  1. XR_004584626.1 RNA Sequence

  2. XR_004584624.1 RNA Sequence

  3. XR_004584625.1 RNA Sequence

Nucleotide Protein
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