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LOC117619530 cellulose synthase A catalytic subunit 3 [UDP-forming] [ Prunus dulcis (almond) ]

Gene ID: 117619530, updated on 6-Jun-2024

Summary

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Gene symbol
LOC117619530
Gene description
cellulose synthase A catalytic subunit 3 [UDP-forming]
Locus tag
ALMOND_2B032095
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117619530 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 2 NC_047651.1 (1321085..1329698, complement)

Chromosome 2 - NC_047651.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g76280-like Neighboring gene putative disease resistance protein RGA3 Neighboring gene protein FRA10AC1 Neighboring gene nuclear transcription factor Y subunit A-1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047651.1 Chromosome 2 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 3 [UDP-forming]
Names
PREDICTED: cellulose

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047651.1 Reference ALMONDv2 Primary Assembly

    Range
    1321085..1329698 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034349510.1 → XP_034205401.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

    UniProtKB/TrEMBL
    A0AAD4WF26
    Conserved Domains (1) summary
    PLN02638
    Location:1 → 1082
    PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

  2. XM_034349511.1 → XP_034205402.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

    UniProtKB/TrEMBL
    A0AAD4WF26
    Conserved Domains (1) summary
    PLN02638
    Location:1 → 1082
    PLN02638; cellulose synthase A (UDP-forming), catalytic subunit
Nucleotide Protein
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