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LOC117617500 hydroxyproline O-galactosyltransferase HPGT1 [ Prunus dulcis (almond) ]

Gene ID: 117617500, updated on 9-Nov-2023

Summary

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Gene symbol
LOC117617500
Gene description
hydroxyproline O-galactosyltransferase HPGT1
Locus tag
ALMOND_2B035294
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117617500 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 2 NC_047651.1 (24940955..24944368)

Chromosome 2 - NC_047651.1Genomic Context describing neighboring genes Neighboring gene ABC transporter C family member 10-like Neighboring gene uncharacterized LOC117618453 Neighboring gene uncharacterized LOC117617501 Neighboring gene uncharacterized LOC117617499

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047651.1 Chromosome 2 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase HPGT1
Names
Hypothetical predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047651.1 Reference ALMONDv2 Primary Assembly

    Range
    24940955..24944368
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034346889.1 → XP_034202780.1  hydroxyproline O-galactosyltransferase HPGT1

    UniProtKB/TrEMBL
    A0A5E4E5V7
    Conserved Domains (1) summary
    PLN03193
    Location:1 → 339
    PLN03193; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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