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LOC117617261 polygalacturonate 4-alpha-galacturonosyltransferase [ Prunus dulcis (almond) ]

Gene ID: 117617261, updated on 6-Jun-2024

Summary

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Gene symbol
LOC117617261
Gene description
polygalacturonate 4-alpha-galacturonosyltransferase
Locus tag
ALMOND_2B002816
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117617261 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 2 NC_047651.1 (16294580..16300900, complement)

Chromosome 2 - NC_047651.1Genomic Context describing neighboring genes Neighboring gene glyoxylate/hydroxypyruvate reductase HPR3-like Neighboring gene uncharacterized LOC117617263 Neighboring gene gibberellin 20 oxidase 1-like Neighboring gene histone deacetylase complex subunit SAP18 Neighboring gene agamous-like MADS-box protein MADS3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047651.1 Chromosome 2 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonate 4-alpha-galacturonosyltransferase
Names
PREDICTED: polygalacturonate

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047651.1 Reference ALMONDv2 Primary Assembly

    Range
    16294580..16300900 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034346562.1 → XP_034202453.1  polygalacturonate 4-alpha-galacturonosyltransferase

    UniProtKB/TrEMBL
    A0A5E4EUD6, A0AAD4WNE0
    Conserved Domains (1) summary
    PLN02910
    Location:16 → 674
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase

  2. XM_034346564.1 → XP_034202455.1  polygalacturonate 4-alpha-galacturonosyltransferase

    UniProtKB/TrEMBL
    A0A5E4EUD6, A0AAD4WNE0
    Conserved Domains (1) summary
    PLN02910
    Location:16 → 674
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase
Nucleotide Protein
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