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LOC117613551 cellulose synthase-like protein D1 [ Prunus dulcis (almond) ]

Gene ID: 117613551, updated on 9-Nov-2023

Summary

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Gene symbol
LOC117613551
Gene description
cellulose synthase-like protein D1
Locus tag
ALMOND_2B015287
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC117613551 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) 1 NC_047650.1 (321038..325661, complement)

Chromosome 1 - NC_047650.1Genomic Context describing neighboring genes Neighboring gene 3-ketoacyl-CoA thiolase 2, peroxisomal Neighboring gene putative vesicle-associated membrane protein 726 Neighboring gene putative F-box protein PP2-B12 Neighboring gene putative F-box protein PP2-B12 Neighboring gene putative F-box protein PP2-B12

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047650.1 Chromosome 1 Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D1
Names
PREDICTED: cellulose synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NC_047650.1 Reference ALMONDv2 Primary Assembly

    Range
    321038..325661 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034342162.1 → XP_034198053.1  cellulose synthase-like protein D1

    UniProtKB/TrEMBL
    A0A4Y1QKC7, A0A5E4FDH9
    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1066
    PLN02248; cellulose synthase-like protein
Nucleotide Protein
Heading Accession and Version

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