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LOC117613497 ribonuclease MC-like [ Prunus dulcis (almond) ]

Gene ID: 117613497, updated on 9-Nov-2023

Summary

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Gene symbol
LOC117613497
Gene description
ribonuclease MC-like
Locus tag
ALMOND_2B029049
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus dulcis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Also known as
RNase; S-RNase; S1-RNase; Sb-RNase; Sf-RNase
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current ALMONDv2 (GCF_902201215.1) Unplaced Scaffold NW_023010349.1 (15403..17640)

NW_023010349.1Genomic Context describing neighboring genes Neighboring gene F-box/kelch-repeat protein At3g06240-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023010349 Unplaced Scaffold Reference ALMONDv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning and characterization of cDNAs encoding S-RNases from almond (Prunus dulcis): primary structural features and sequence diversity of the S-RNases in Rosaceae. Ushijima K, et al. Mol Gen Genet, 1998 Nov. PMID 9862480
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribonuclease T2 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribonuclease MC-like
Names
PREDICTED: S-RNase
ribonuclease S16
ribonuclease S17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ALMONDv2 Primary Assembly

Genomic

  1. NW_023010349.1 Reference ALMONDv2 Primary Assembly

    Range
    15403..17640
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034342100.1 → XP_034197991.1  ribonuclease MC-like

    UniProtKB/TrEMBL
    A0A4D6RK67, Q9ZP46
    Conserved Domains (1) summary
    cd01061
    Location:30 → 230
    RNase_T2_euk; Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf ...
Nucleotide Protein
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