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Scgdelta sarcoglycan delta [ Osmia lignaria (orchard mason bee) ]

Gene ID: 117600087, updated on 10-Oct-2024

Summary

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Gene symbol
Scgdelta
Gene description
sarcoglycan delta
Gene type
protein coding
RefSeq status
MODEL
Organism
Osmia lignaria
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Megachilidae; Megachilinae; Osmia
Orthologs
fruit fly honey bee all
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Genomic context

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See Scgdelta in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current USDA_OLig_1.0 (GCF_012274295.1) Unplaced Scaffold NW_023009251.1 (3661675..3820264, complement)

NW_023009251.1Genomic Context describing neighboring genes Neighboring gene phospholipase A1 member A Neighboring gene RNA-binding protein 6 Neighboring gene uncharacterized LOC117600093 Neighboring gene proton channel OtopLc-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023009251 Unplaced Scaffold Reference USDA_OLig_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Osmia lignaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OLig_1.0

Genomic

  1. NW_023009251.1 Reference USDA_OLig_1.0

    Range
    3661675..3820264 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034315073.1 → XP_034170964.1  zeta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:134 → 403
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_034315074.1 → XP_034170965.1  zeta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:131 → 400
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_034315076.1 → XP_034170967.1  zeta-sarcoglycan isoform X3

    Conserved Domains (1) summary
    pfam04790
    Location:52 → 321
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_034315075.1 → XP_034170966.1  zeta-sarcoglycan isoform X3

    Conserved Domains (1) summary
    pfam04790
    Location:52 → 321
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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