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tlr18 toll-like receptor 18 [ Gymnodraco acuticeps ]

Gene ID: 117563201, updated on 19-Mar-2024

Summary

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Gene symbol
tlr18
Gene description
toll-like receptor 18
See related
EnsemblRapid:ENSGAUG00000004840
Gene type
protein coding
RefSeq status
MODEL
Organism
Gymnodraco acuticeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Bathydraconidae; Gymnodraco
Orthologs
zebrafish all
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Genomic context

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See tlr18 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current fGymAcu1.1 (GCF_902827175.1) Unplaced Scaffold NW_022991397.1 (275346..286634)

NW_022991397.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat and Ig domain containing 4b Neighboring gene E3 ubiquitin-protein ligase TRIM39-like Neighboring gene uncharacterized LOC117563202 Neighboring gene S100 calcium binding protein A1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022991397 Unplaced Scaffold Reference fGymAcu1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gymnodraco acuticeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fGymAcu1.1

Genomic

  1. NW_022991397.1 Reference fGymAcu1.1

    Range
    275346..286634
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034241387.1 → XP_034097278.1  toll-like receptor 18

    UniProtKB/TrEMBL
    A0A6P8WDG3
    Related
    ENSGAUP00000010479.1, ENSGAUT00000010902.1
    Conserved Domains (6) summary
    smart00255
    Location:665 → 804
    TIR; Toll - interleukin 1 - resistance
    COG4886
    Location:51 → 187
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:62 → 85
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:374 → 401
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:84 → 143
    LRR_8; Leucine rich repeat
    cl39015
    Location:374 → 511
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
Nucleotide Protein
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