U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC117561444 TNF receptor-associated factor 2-like [ Gymnodraco acuticeps ]

Gene ID: 117561444, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC117561444
Gene description
TNF receptor-associated factor 2-like
See related
EnsemblRapid:ENSGAUG00000020702
Gene type
protein coding
RefSeq status
MODEL
Organism
Gymnodraco acuticeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Bathydraconidae; Gymnodraco
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC117561444 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current fGymAcu1.1 (GCF_902827175.1) Unplaced Scaffold NW_022991216.1 (3904046..3912797, complement)

NW_022991216.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117561456 Neighboring gene tenascin Neighboring gene GRAM domain-containing protein 2B-like Neighboring gene zinc finger protein 703-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_022991216 Unplaced Scaffold Reference fGymAcu1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of JNK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of plasma membrane signaling receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
TNF receptor-associated factor 2-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gymnodraco acuticeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fGymAcu1.1

Genomic

  1. NW_022991216.1 Reference fGymAcu1.1

    Range
    3904046..3912797 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034238878.1 → XP_034094769.1  TNF receptor-associated factor 2-like

    UniProtKB/TrEMBL
    A0A6P8VUQ7
    Related
    ENSGAUP00000045846.1, ENSGAUT00000047724.1
    Conserved Domains (5) summary
    TIGR00599
    Location:34 → 157
    rad18; DNA repair protein rad18
    cd16639
    Location:32 → 73
    RING-HC_TRAF2; RING finger, HC subclass, found in tumor necrosis factor (TNF) receptor-associated factor 2 (TRAF2) and similar proteins
    cl02446
    Location:434 → 595
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam16673
    Location:367 → 427
    TRAF_BIRC3_bd; TNF receptor-associated factor BIRC3 binding domain
    cl40617
    Location:178 → 235
    zf-TRAF; TRAF-type zinc finger
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases