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LOC117556193 toll-like receptor 2 [ Gymnodraco acuticeps ]

Gene ID: 117556193, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117556193
Gene description
toll-like receptor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gymnodraco acuticeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Bathydraconidae; Gymnodraco
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Genomic context

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See LOC117556193 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current fGymAcu1.1 (GCF_902827175.1) Unplaced Scaffold NW_022990701.1 (3915917..3918633)

NW_022990701.1Genomic Context describing neighboring genes Neighboring gene meiotic nuclear divisions 1 homolog (S. cerevisiae) Neighboring gene transmembrane 131 like Neighboring gene protein PERCC1 Neighboring gene uncharacterized LOC117556211

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022990701 Unplaced Scaffold Reference fGymAcu1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacyl lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gymnodraco acuticeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fGymAcu1.1

Genomic

  1. NW_022990701.1 Reference fGymAcu1.1

    Range
    3915917..3918633
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034231476.1 → XP_034087367.1  toll-like receptor 2

    UniProtKB/TrEMBL
    A0A6P8WIX2
    Conserved Domains (5) summary
    PRK15370
    Location:285 → 434
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    smart00255
    Location:563 → 705
    TIR; Toll - interleukin 1 - resistance
    sd00033
    Location:60 → 82
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:82 → 140
    LRR_8; Leucine rich repeat
    cd21340
    Location:67 → 190
    PPP1R42; protein phosphatase 1 regulatory subunit 42
Nucleotide Protein
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