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kirrel3a kirre like nephrin family adhesion molecule 3a [ Gymnodraco acuticeps ]

Gene ID: 117553053, updated on 19-Mar-2024

Summary

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Gene symbol
kirrel3a
Gene description
kirre like nephrin family adhesion molecule 3a
See related
EnsemblRapid:ENSGAUG00000008129
Gene type
protein coding
RefSeq status
MODEL
Organism
Gymnodraco acuticeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Bathydraconidae; Gymnodraco
Orthologs
human zebrafish all
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Genomic context

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See kirrel3a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current fGymAcu1.1 (GCF_902827175.1) Unplaced Scaffold NW_022990502.1 (1586997..1949623)

NW_022990502.1Genomic Context describing neighboring genes Neighboring gene galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1-like Neighboring gene beta-galactosidase-1-like protein 2 Neighboring gene uncharacterized LOC117553061 Neighboring gene uncharacterized LOC117553055 Neighboring gene uncharacterized LOC117553019 Neighboring gene THAP domain-containing protein 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022990502 Unplaced Scaffold Reference fGymAcu1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gymnodraco acuticeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fGymAcu1.1

Genomic

  1. NW_022990502.1 Reference fGymAcu1.1

    Range
    1586997..1949623
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034226819.1 → XP_034082710.1  kin of IRRE-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P8VAH6
    Related
    ENSGAUP00000021190.1, ENSGAUT00000022029.1
    Conserved Domains (4) summary
    cd00096
    Location:315 → 319
    Ig; Ig strand A' [structural motif]
    cd05759
    Location:121 → 218
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:390 → 487
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:307 → 388
    Ig; Immunoglobulin domain

  2. XM_034226821.1 → XP_034082712.1  kin of IRRE-like protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A6P8W503
    Conserved Domains (5) summary
    smart00410
    Location:26 → 115
    IG_like; Immunoglobulin like
    cd00096
    Location:315 → 319
    Ig; Ig strand A' [structural motif]
    cd05759
    Location:121 → 218
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:390 → 487
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:307 → 388
    Ig; Immunoglobulin domain

  3. XM_034226820.1 → XP_034082711.1  kin of IRRE-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A6P8V004
    Related
    ENSGAUP00000021208.1, ENSGAUT00000022047.1
    Conserved Domains (4) summary
    cd00096
    Location:315 → 319
    Ig; Ig strand A' [structural motif]
    cd05759
    Location:121 → 218
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:390 → 487
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:307 → 388
    Ig; Immunoglobulin domain
Nucleotide Protein
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