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LOC117548201 cytokine-inducible SH2-containing protein-like [ Gymnodraco acuticeps ]

Gene ID: 117548201, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117548201
Gene description
cytokine-inducible SH2-containing protein-like
See related
EnsemblRapid:ENSGAUG00000003518
Gene type
protein coding
RefSeq status
MODEL
Organism
Gymnodraco acuticeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Bathydraconidae; Gymnodraco
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Genomic context

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See LOC117548201 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current fGymAcu1.1 (GCF_902827175.1) Unplaced Scaffold NW_022990235.1 (1352823..1355356)

NW_022990235.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 82 Neighboring gene twinfilin-2 Neighboring gene HemK methyltransferase family member 1 Neighboring gene NPR2 like, GATOR1 complex subunit Neighboring gene zinc finger, MYND-type containing 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022990235 Unplaced Scaffold Reference fGymAcu1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of phosphatidylinositol 3-kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytokine-inducible SH2-containing protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gymnodraco acuticeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fGymAcu1.1

Genomic

  1. NW_022990235.1 Reference fGymAcu1.1

    Range
    1352823..1355356
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034219329.1 → XP_034075220.1  cytokine-inducible SH2-containing protein-like

    UniProtKB/TrEMBL
    A0A6P8USG5
    Related
    ENSGAUP00000007858.1, ENSGAUT00000008156.1
    Conserved Domains (2) summary
    cd10718
    Location:57 → 144
    SH2_CIS; Src homology 2 (SH2) domain found in cytokine-inducible SH2-containing protein (CIS)
    cl02533
    Location:187 → 225
    SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...
Nucleotide Protein
Heading Accession and Version

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