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sgca sarcoglycan, alpha [ Gymnodraco acuticeps ]

Gene ID: 117547360, updated on 19-Mar-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
See related
EnsemblRapid:ENSGAUG00000025388
Gene type
protein coding
RefSeq status
MODEL
Organism
Gymnodraco acuticeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Bathydraconidae; Gymnodraco
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fGymAcu1.1 (GCF_902827175.1) Unplaced Scaffold NW_022990198.1 (1126820..1134745)

NW_022990198.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase PRDM9-like Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene neurabin-2-like Neighboring gene collagen, type I, alpha 1b Neighboring gene inactive all-trans-retinol 13,14-reductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022990198 Unplaced Scaffold Reference fGymAcu1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gymnodraco acuticeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fGymAcu1.1

Genomic

  1. NW_022990198.1 Reference fGymAcu1.1

    Range
    1126820..1134745
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034217999.1 → XP_034073890.1  alpha-sarcoglycan

    UniProtKB/TrEMBL
    A0A6P8UAL8
    Conserved Domains (1) summary
    pfam05510
    Location:6 → 381
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_034218000.1 → XP_034073891.1  alpha-sarcoglycan

    UniProtKB/TrEMBL
    A0A6P8UAL8
    Related
    ENSGAUP00000058240.1, ENSGAUT00000060463.1
    Conserved Domains (1) summary
    pfam05510
    Location:6 → 381
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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