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hcfc1a host cell factor C1a [ Gymnodraco acuticeps ]

Gene ID: 117543725, updated on 19-Mar-2024

Summary

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Gene symbol
hcfc1a
Gene description
host cell factor C1a
See related
EnsemblRapid:ENSGAUG00000007942
Gene type
protein coding
RefSeq status
MODEL
Organism
Gymnodraco acuticeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Bathydraconidae; Gymnodraco
Orthologs
zebrafish all
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Genomic context

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See hcfc1a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
100 current fGymAcu1.1 (GCF_902827175.1) Unplaced Scaffold NW_022989983.1 (1645466..1664767)

NW_022989983.1Genomic Context describing neighboring genes Neighboring gene opsin 1 (cone pigments), short-wave-sensitive 2 Neighboring gene blue-sensitive opsin-like Neighboring gene uncharacterized LOC117543726 Neighboring gene GATA binding protein 1a Neighboring gene bcl-2-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022989983 Unplaced Scaffold Reference fGymAcu1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gymnodraco acuticeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fGymAcu1.1

Genomic

  1. NW_022989983.1 Reference fGymAcu1.1

    Range
    1645466..1664767
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034212220.1 → XP_034068111.1  host cell factor 1a

    UniProtKB/TrEMBL
    A0A6P8TUV9
    Related
    ENSGAUP00000019472.1, ENSGAUT00000020240.1
    Conserved Domains (5) summary
    PLN02153
    Location:8 → 329
    PLN02153; epithiospecifier protein
    cd00063
    Location:1532 → 1561
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:196 → 249
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:315 → 347
    Kelch_5; Kelch motif
    cl21522
    Location:1568 → 1670
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
Nucleotide Protein
Heading Accession and Version

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