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tab2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 [ Trematomus bernacchii (emerald rockcod) ]

Gene ID: 117498309, updated on 19-Mar-2024

Summary

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Gene symbol
tab2
Gene description
TGF-beta activated kinase 1 (MAP3K7) binding protein 2
See related
EnsemblRapid:ENSTBNG00005020546
Gene type
protein coding
RefSeq status
MODEL
Organism
Trematomus bernacchii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Trematomus
Orthologs
human zebrafish all
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Genomic context

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See tab2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current fTreBer1.1 (GCF_902827165.1) Unplaced Scaffold NW_022987803.1 (1723153..1762651, complement)

NW_022987803.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117498317 Neighboring gene endoribonuclease ZC3H12A-like Neighboring gene uncharacterized LOC117498537 Neighboring gene adenosylmethionine decarboxylase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022987803 Unplaced Scaffold Reference fTreBer1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TGF-beta-activated kinase 1 and MAP3K7-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trematomus bernacchii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTreBer1.1

Genomic

  1. NW_022987803.1 Reference fTreBer1.1

    Range
    1723153..1762651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034150324.1 → XP_034006215.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 isoform X4

    Conserved Domains (3) summary
    smart00547
    Location:719 → 742
    ZnF_RBZ; Zinc finger domain
    cd14362
    Location:9 → 71
    CUE_TAB2_TAB3; CUE domain found in the N-terminal of TGF-beta-activated kinase 1 and MAP3K7-binding proteins TAB2, TAB3 and similar proteins
    sd00029
    Location:720 → 739
    zf-RanBP2; RanBP2-type Zn finger [structural motif]

  2. XM_034150322.1 → XP_034006213.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 isoform X2

    Conserved Domains (3) summary
    smart00547
    Location:746 → 769
    ZnF_RBZ; Zinc finger domain
    cd14362
    Location:9 → 71
    CUE_TAB2_TAB3; CUE domain found in the N-terminal of TGF-beta-activated kinase 1 and MAP3K7-binding proteins TAB2, TAB3 and similar proteins
    sd00029
    Location:747 → 766
    zf-RanBP2; RanBP2-type Zn finger [structural motif]

  3. XM_034150321.1 → XP_034006212.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 isoform X1

    Conserved Domains (3) summary
    smart00547
    Location:751 → 774
    ZnF_RBZ; Zinc finger domain
    cd14362
    Location:9 → 71
    CUE_TAB2_TAB3; CUE domain found in the N-terminal of TGF-beta-activated kinase 1 and MAP3K7-binding proteins TAB2, TAB3 and similar proteins
    sd00029
    Location:752 → 771
    zf-RanBP2; RanBP2-type Zn finger [structural motif]

  4. XM_034150320.1 → XP_034006211.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 isoform X1

    Conserved Domains (3) summary
    smart00547
    Location:751 → 774
    ZnF_RBZ; Zinc finger domain
    cd14362
    Location:9 → 71
    CUE_TAB2_TAB3; CUE domain found in the N-terminal of TGF-beta-activated kinase 1 and MAP3K7-binding proteins TAB2, TAB3 and similar proteins
    sd00029
    Location:752 → 771
    zf-RanBP2; RanBP2-type Zn finger [structural motif]

  5. XM_034150325.1 → XP_034006216.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 isoform X5

    Related
    ENSTBNP00005046885.1, ENSTBNT00005048497.1
    Conserved Domains (3) summary
    smart00547
    Location:698 → 721
    ZnF_RBZ; Zinc finger domain
    cd14362
    Location:9 → 50
    CUE_TAB2_TAB3; CUE domain found in the N-terminal of TGF-beta-activated kinase 1 and MAP3K7-binding proteins TAB2, TAB3 and similar proteins
    sd00029
    Location:699 → 718
    zf-RanBP2; RanBP2-type Zn finger [structural motif]

  6. XM_034150323.1 → XP_034006214.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 isoform X3

    Related
    ENSTBNP00005046884.1, ENSTBNT00005048496.1
    Conserved Domains (3) summary
    smart00547
    Location:730 → 753
    ZnF_RBZ; Zinc finger domain
    cd14362
    Location:9 → 50
    CUE_TAB2_TAB3; CUE domain found in the N-terminal of TGF-beta-activated kinase 1 and MAP3K7-binding proteins TAB2, TAB3 and similar proteins
    sd00029
    Location:731 → 750
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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