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LOC117497321 conglutinin-like [ Trematomus bernacchii (emerald rockcod) ]

Gene ID: 117497321, updated on 30-Sep-2021

Summary

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Gene symbol
LOC117497321
Gene description
conglutinin-like
See related
EnsemblRapid:ENSTBNG00005024029
Gene type
protein coding
RefSeq status
MODEL
Organism
Trematomus bernacchii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Trematomus
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Genomic context

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See LOC117497321 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current fTreBer1.1 (GCF_902827165.1) Unplaced Scaffold NW_022987778.1 (4757292..4763144)

NW_022987778.1Genomic Context describing neighboring genes Neighboring gene dispanin subfamily A member 2b-like Neighboring gene dispanin subfamily A member 2b-like Neighboring gene uncharacterized LOC117497224 Neighboring gene uncharacterized LOC117497334

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022987778 Unplaced Scaffold Reference fTreBer1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
conglutinin-like; mannose-binding protein C-like; pulmonary surfactant-associated protein D-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trematomus bernacchii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTreBer1.1

Genomic

  1. NW_022987778.1 Reference fTreBer1.1

    Range
    4757292..4763144
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034149290.1 → XP_034005181.1  pulmonary surfactant-associated protein D-like isoform X2

    Related
    ENSTBNP00005055681.1, ENSTBNT00005057578.1
    Conserved Domains (1) summary
    cl02432
    Location:125 → 240
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_034149289.1 → XP_034005180.1  conglutinin-like isoform X1

    Related
    ENSTBNP00005055674.1, ENSTBNT00005057571.1
    Conserved Domains (2) summary
    pfam01391
    Location:28 → 96
    Collagen; Collagen triple helix repeat (20 copies)
    cl02432
    Location:130 → 242
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  3. XM_034149288.1 → XP_034005179.1  conglutinin-like isoform X1

    Conserved Domains (2) summary
    pfam01391
    Location:28 → 96
    Collagen; Collagen triple helix repeat (20 copies)
    cl02432
    Location:130 → 242
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  4. XM_034149291.1 → XP_034005182.1  mannose-binding protein C-like isoform X3

    Conserved Domains (1) summary
    cl02432
    Location:74 → 186
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
Heading Accession and Version

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