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LOC117492937 immunoglobulin gamma-1 heavy chain-like [ Trematomus bernacchii (emerald rockcod) ]

Gene ID: 117492937, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117492937
Gene description
immunoglobulin gamma-1 heavy chain-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Trematomus bernacchii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Trematomus
Also known as
IgH
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Genomic context

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See LOC117492937 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current fTreBer1.1 (GCF_902827165.1) Unplaced Scaffold NW_022987720.1 (23506358..23569846, complement)

NW_022987720.1Genomic Context describing neighboring genes Neighboring gene nucleus accumbens associated 1, BEN and BTB (POZ) domain containing a Neighboring gene uncharacterized LOC117492929 Neighboring gene uncharacterized LOC117493033 Neighboring gene immunoglobulin gamma-1 heavy chain-like Neighboring gene Ig heavy chain V region 6.96-like Neighboring gene immunoglobulin heavy variable 3-21-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022987720 Unplaced Scaffold Reference fTreBer1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Allelic polymorphism of Immunoglobulin heavy chain genes in the Antarctic teleost Trematomus bernacchii. Coscia MR, et al. Mar Genomics, 2012 Dec. PMID 23199879
  2. Specific features of immunoglobulin VH genes of the Antarctic teleost Trematomus bernacchii. Oreste U, et al. Gene, 2002 Aug 7. PMID 12354654
  3. Analysis of a cDNA sequence encoding the immunoglobulin heavy chain of the Antarctic teleost Trematomus bernacchii. Coscia MR, et al. Fish Shellfish Immunol, 2000 May. PMID 10938744
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables immunoglobulin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in B cell receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in complement activation, classical pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phagocytosis, engulfment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phagocytosis, recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of B cell activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in blood microparticle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of immunoglobulin complex, circulating IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: immunoglobulin gamma-1 heavy chain-like
Names
immunoglobulin heavy chain constant region A
immunoglobulin heavy chain constant region B
immunoglobulin mu heavy chain constant region
membrane-bound Ig heavy chain
membrane-bound immunoglobulin heavy chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trematomus bernacchii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTreBer1.1

Genomic

  1. NW_022987720.1 Reference fTreBer1.1

    Range
    23506358..23569846 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034143368.1 → XP_033999259.1  LOW QUALITY PROTEIN: immunoglobulin gamma-1 heavy chain-like

    Conserved Domains (3) summary
    cd00096
    Location:39 → 42
    Ig; Ig strand A [structural motif]
    cd21819
    Location:161 → 255
    IgC1_CH1_IgM; CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin heavy mu chain; member of the C1-set of Ig superfamily (IgSF) domains
    cl11960
    Location:39 → 152
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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