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kirrel3l kirre like nephrin family adhesion molecule 3, like [ Trematomus bernacchii (emerald rockcod) ]

Gene ID: 117480186, updated on 19-Mar-2024

Summary

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Gene symbol
kirrel3l
Gene description
kirre like nephrin family adhesion molecule 3, like
See related
EnsemblRapid:ENSTBNG00005003327
Gene type
protein coding
RefSeq status
MODEL
Organism
Trematomus bernacchii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Trematomus
Orthologs
human zebrafish all
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Genomic context

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See kirrel3l in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current fTreBer1.1 (GCF_902827165.1) Unplaced Scaffold NW_022987582.1 (4848176..4880928)

NW_022987582.1Genomic Context describing neighboring genes Neighboring gene FXYD domain containing ion transport regulator 5 Neighboring gene NPHS1 adhesion molecule, nephrin Neighboring gene ST14 transmembrane serine protease matriptase Neighboring gene amyloid beta (A4) precursor-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022987582 Unplaced Scaffold Reference fTreBer1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kirre like nephrin family adhesion molecule 3, like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trematomus bernacchii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTreBer1.1

Genomic

  1. NW_022987582.1 Reference fTreBer1.1

    Range
    4848176..4880928
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034127400.1 → XP_033983291.1  kirre like nephrin family adhesion molecule 3, like isoform X1

    Conserved Domains (4) summary
    pfam13927
    Location:306 → 371
    Ig_3; Immunoglobulin domain
    cd00096
    Location:390 → 394
    Ig; Ig strand A [structural motif]
    cd05759
    Location:120 → 217
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:389 → 486
    Ig; Immunoglobulin domain

  2. XM_034127401.1 → XP_033983292.1  kirre like nephrin family adhesion molecule 3, like isoform X2

    Related
    ENSTBNP00005008499.1, ENSTBNT00005008966.1
    Conserved Domains (4) summary
    pfam13927
    Location:306 → 371
    Ig_3; Immunoglobulin domain
    cd00096
    Location:390 → 394
    Ig; Ig strand A [structural motif]
    cd05759
    Location:120 → 217
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:389 → 486
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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