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ano5b anoctamin 5b [ Trematomus bernacchii (emerald rockcod) ]

Gene ID: 117471465, updated on 19-Mar-2024

Summary

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Gene symbol
ano5b
Gene description
anoctamin 5b
See related
EnsemblRapid:ENSTBNG00005021939
Gene type
protein coding
RefSeq status
MODEL
Organism
Trematomus bernacchii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Trematomus
Orthologs
zebrafish all
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Genomic context

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See ano5b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current fTreBer1.1 (GCF_902827165.1) Unplaced Scaffold NW_022987973.1 (10532564..10554309)

NW_022987973.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3, subunit Jb Neighboring gene cartilage intermediate layer protein, nucleotide pyrophosphohydrolase Neighboring gene immunoglobulin superfamily, DCC subclass, member 3 Neighboring gene uncharacterized LOC117471899 Neighboring gene solute carrier family 17 member 6b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022987973 Unplaced Scaffold Reference fTreBer1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-5b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trematomus bernacchii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTreBer1.1

Genomic

  1. NW_022987973.1 Reference fTreBer1.1

    Range
    10532564..10554309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034116508.1 → XP_033972399.1  anoctamin-5b isoform X1

    Related
    ENSTBNP00005051871.1, ENSTBNT00005053692.1
    Conserved Domains (2) summary
    pfam04547
    Location:292 → 875
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:72 → 289
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  2. XM_034116509.1 → XP_033972400.1  anoctamin-5b isoform X2

    Related
    ENSTBNP00005051855.1, ENSTBNT00005053676.1
    Conserved Domains (2) summary
    pfam04547
    Location:277 → 860
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:57 → 274
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin
Nucleotide Protein
Heading Accession and Version

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