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pde9al phosphodiesterase 9A like [ Trematomus bernacchii (emerald rockcod) ]

Gene ID: 117470476, updated on 19-Mar-2024

Summary

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Gene symbol
pde9al
Gene description
phosphodiesterase 9A like
See related
EnsemblRapid:ENSTBNG00005015054
Gene type
protein coding
RefSeq status
MODEL
Organism
Trematomus bernacchii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Trematomus
Orthologs
zebrafish all
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Genomic context

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See pde9al in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current fTreBer1.1 (GCF_902827165.1) Unplaced Scaffold NW_022987910.1 (3894327..3907706, complement)

NW_022987910.1Genomic Context describing neighboring genes Neighboring gene TLC domain containing 5a Neighboring gene OAF homolog a (Drosophila) Neighboring gene hepatic and glial cell adhesion molecule a Neighboring gene sperm autoantigenic protein 17

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022987910 Unplaced Scaffold Reference fTreBer1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-GMP phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cGMP catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cGMP-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trematomus bernacchii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTreBer1.1

Genomic

  1. NW_022987910.1 Reference fTreBer1.1

    Range
    3894327..3907706 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034115268.1 → XP_033971159.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X3

    Conserved Domains (1) summary
    pfam00233
    Location:251 → 481
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  2. XM_034115267.1 → XP_033971158.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X2

    Conserved Domains (1) summary
    pfam00233
    Location:251 → 481
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  3. XM_034115266.1 → XP_033971157.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X1

    Related
    ENSTBNP00005033853.1, ENSTBNT00005035118.1
    Conserved Domains (1) summary
    pfam00233
    Location:251 → 481
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
Nucleotide Protein
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