U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC117469881 toll-like receptor 2 [ Trematomus bernacchii (emerald rockcod) ]

Gene ID: 117469881, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC117469881
Gene description
toll-like receptor 2
See related
EnsemblRapid:ENSTBNG00005002752
Gene type
protein coding
RefSeq status
MODEL
Organism
Trematomus bernacchii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Trematomus
Also known as
TLR2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC117469881 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fTreBer1.1 (GCF_902827165.1) Unplaced Scaffold NW_022987889.1 (312301..329532, complement)

NW_022987889.1Genomic Context describing neighboring genes Neighboring gene protein FAM111A-like Neighboring gene protein FAM111A-like Neighboring gene fibrinogen beta chain Neighboring gene fibrinogen alpha chain

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_022987889 Unplaced Scaffold Reference fTreBer1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacyl lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
toll-like receptor 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Trematomus bernacchii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTreBer1.1

Genomic

  1. NW_022987889.1 Reference fTreBer1.1

    Range
    312301..329532 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034114347.1 → XP_033970238.1  toll-like receptor 2

    UniProtKB/TrEMBL
    D2D3C7
    Related
    ENSTBNP00005004824.1, ENSTBNT00005005077.1
    Conserved Domains (5) summary
    smart00255
    Location:642 → 796
    TIR; Toll - interleukin 1 - resistance
    COG4886
    Location:381 → 508
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:75 → 98
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:386 → 411
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:74 → 128
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.