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LOC117463567 toll-like receptor 2 [ Pseudochaenichthys georgianus (South Georgia icefish) ]

Gene ID: 117463567, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117463567
Gene description
toll-like receptor 2
See related
EnsemblRapid:ENSPGEG00000010756
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudochaenichthys georgianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Channichthyidae; Pseudochaenichthys
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Genomic context

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See LOC117463567 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
13
Annotation release Status Assembly Chr Location
100 current fPseGeo1.1 (GCF_902827115.1) 18 NC_047520.1 (540594..557847, complement)

Chromosome 18 - NC_047520.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 175 Neighboring gene basic salivary proline-rich protein 2-like Neighboring gene protein FAM111A-like Neighboring gene eosinophil lineage-specific marker Neighboring gene fibrinogen beta chain Neighboring gene fibrinogen alpha chain

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047520.1 Chromosome 18 Reference fPseGeo1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacyl lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudochaenichthys georgianus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPseGeo1.1

Genomic

  1. NC_047520.1 Reference fPseGeo1.1

    Range
    540594..557847 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034105884.1 → XP_033961775.1  toll-like receptor 2

    Related
    ENSPGEP00000022766.1, ENSPGET00000023803.1
    Conserved Domains (5) summary
    smart00255
    Location:640 → 794
    TIR; Toll - interleukin 1 - resistance
    COG4886
    Location:379 → 506
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:51 → 72
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:384 → 409
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:72 → 130
    LRR_8; Leucine rich repeat

  2. XM_034105885.1 → XP_033961776.1  toll-like receptor 2

    Related
    ENSPGEP00000022768.1, ENSPGET00000023805.1
    Conserved Domains (5) summary
    smart00255
    Location:640 → 794
    TIR; Toll - interleukin 1 - resistance
    COG4886
    Location:379 → 506
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:51 → 72
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:384 → 409
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:72 → 130
    LRR_8; Leucine rich repeat
Nucleotide Protein
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