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LOC117452813 VIP36-like protein [ Pseudochaenichthys georgianus (South Georgia icefish) ]

Gene ID: 117452813, updated on 19-Jun-2024

Summary

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Gene symbol
LOC117452813
Gene description
VIP36-like protein
See related
EnsemblRapid:ENSPGEG00000002340
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudochaenichthys georgianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Channichthyidae; Pseudochaenichthys
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Genomic context

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See LOC117452813 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
100 current fPseGeo1.1 (GCF_902827115.1) 9 NC_047511.1 (3613673..3623898)

Chromosome 9 - NC_047511.1Genomic Context describing neighboring genes Neighboring gene chromaffin granule amine transporter Neighboring gene TELO2 interacting protein 2 Neighboring gene leukocyte surface antigen CD53-like Neighboring gene NMDA receptor synaptonuclear signaling and neuronal migration factor b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047511.1 Chromosome 9 Reference fPseGeo1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudochaenichthys georgianus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPseGeo1.1

Genomic

  1. NC_047511.1 Reference fPseGeo1.1

    Range
    3613673..3623898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034091586.1 → XP_033947477.1  VIP36-like protein isoform X1

    Related
    ENSPGEP00000004946.1, ENSPGET00000005196.1
    Conserved Domains (1) summary
    cl14058
    Location:56 → 301
    lectin_L-type; legume lectins

  2. XM_034091587.1 → XP_033947478.1  VIP36-like protein isoform X2

    Conserved Domains (1) summary
    cl14058
    Location:56 → 300
    lectin_L-type; legume lectins
Nucleotide Protein
Heading Accession and Version

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