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ano5a anoctamin 5a [ Pseudochaenichthys georgianus (South Georgia icefish) ]

Gene ID: 117447754, updated on 19-Mar-2024

Summary

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Gene symbol
ano5a
Gene description
anoctamin 5a
See related
EnsemblRapid:ENSPGEG00000008672
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudochaenichthys georgianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Channichthyidae; Pseudochaenichthys
Orthologs
human zebrafish all
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Genomic context

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See ano5a in Genome Data Viewer
Location:
chromosome: 6
Exon count:
24
Annotation release Status Assembly Chr Location
100 current fPseGeo1.1 (GCF_902827115.1) 6 NC_047508.1 (31319064..31337459)

Chromosome 6 - NC_047508.1Genomic Context describing neighboring genes Neighboring gene single immunoglobulin and toll-interleukin 1 receptor (TIR) domain Neighboring gene anoctamin-9 Neighboring gene P2Y purinoceptor 4-like Neighboring gene vesicular glutamate transporter 2.1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047508.1 Chromosome 6 Reference fPseGeo1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudochaenichthys georgianus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPseGeo1.1

Genomic

  1. NC_047508.1 Reference fPseGeo1.1

    Range
    31319064..31337459
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034084629.1 → XP_033940520.1  anoctamin-5 isoform X1

    Conserved Domains (2) summary
    pfam04547
    Location:338 → 926
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:118 → 335
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  2. XM_034084630.1 → XP_033940521.1  anoctamin-5 isoform X2

    Related
    ENSPGEP00000018187.1, ENSPGET00000019013.1
    Conserved Domains (2) summary
    pfam04547
    Location:338 → 924
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:118 → 335
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  3. XM_034084631.1 → XP_033940522.1  anoctamin-5 isoform X3

    Conserved Domains (2) summary
    pfam04547
    Location:324 → 912
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:104 → 321
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  4. XM_034084632.1 → XP_033940523.1  anoctamin-5 isoform X4

    Conserved Domains (2) summary
    pfam04547
    Location:278 → 866
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:58 → 275
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  5. XM_034084634.1 → XP_033940525.1  anoctamin-5 isoform X6

    Related
    ENSPGEP00000018199.1, ENSPGET00000019025.1
    Conserved Domains (2) summary
    pfam04547
    Location:233 → 821
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:13 → 230
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  6. XM_034084633.1 → XP_033940524.1  anoctamin-5 isoform X5

    Related
    ENSPGEP00000018202.1, ENSPGET00000019028.1
    Conserved Domains (2) summary
    pfam04547
    Location:234 → 822
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:14 → 231
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin
Nucleotide Protein
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