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capn3b calpain 3b [ Pseudochaenichthys georgianus (South Georgia icefish) ]

Gene ID: 117439943, updated on 19-Mar-2024

Summary

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Gene symbol
capn3b
Gene description
calpain 3b
See related
EnsemblRapid:ENSPGEG00000004331
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudochaenichthys georgianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Channichthyidae; Pseudochaenichthys
Orthologs
zebrafish all
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Genomic context

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See capn3b in Genome Data Viewer
Location:
chromosome: 24
Exon count:
23
Annotation release Status Assembly Chr Location
100 current fPseGeo1.1 (GCF_902827115.1) 24 NC_047526.1 (26639135..26655156, complement)

Chromosome 24 - NC_047526.1Genomic Context describing neighboring genes Neighboring gene churchill domain containing 1 Neighboring gene zinc finger protein 106b Neighboring gene nuclear receptor binding protein 1 Neighboring gene uncharacterized LOC117439604 Neighboring gene macoilin-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047526.1 Chromosome 24 Reference fPseGeo1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudochaenichthys georgianus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPseGeo1.1

Genomic

  1. NC_047526.1 Reference fPseGeo1.1

    Range
    26639135..26655156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034076086.1 → XP_033931977.1  calpain-3b isoform X1

    Conserved Domains (4) summary
    cl25352
    Location:602 → 770
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:76 → 370
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:391 → 529
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:537 → 579
    Calpain_u2; Unstructured region on Calpain-3

  2. XM_034076088.1 → XP_033931979.1  calpain-3b isoform X2

    Related
    ENSPGEP00000011729.1, ENSPGET00000012274.1
    Conserved Domains (4) summary
    cl25352
    Location:594 → 762
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:76 → 370
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:391 → 529
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:537 → 571
    Calpain_u2; Unstructured region on Calpain-3
Nucleotide Protein
Heading Accession and Version

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