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LOC117435229 polypeptide N-acetylgalactosaminyltransferase 1 [ Acipenser ruthenus (sterlet) ]

Gene ID: 117435229, updated on 10-Oct-2024

Summary

Gene symbol
LOC117435229
Gene description
polypeptide N-acetylgalactosaminyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
Also known as
galnt1
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Genomic context

See LOC117435229 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 3 NC_081191.1 (41829675..42089013, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 4 NC_048326.1 (66015605..66254786)

Chromosome 3 - NC_081191.1Genomic Context describing neighboring genes Neighboring gene DOMON domain-containing protein FRRS1L-like Neighboring gene transmembrane protein 245 Neighboring gene INO80 complex subunit C Neighboring gene transfer RNA threonine (anticodon UGU)

Genomic regions, transcripts, and products

General protein information

Preferred Names
polypeptide N-acetylgalactosaminyltransferase 1
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081191.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    41829675..42089013 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059012946.1XP_058868929.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X1

  2. XM_034920767.2XP_034776658.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A444UMN2
    Conserved Domains (2) summary
    cd02510
    Location:117417
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:430546
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
  3. XM_059012947.1XP_058868930.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X1

  4. XM_059012948.1XP_058868931.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X2